Publications

8125 results for AI

Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell Analyses
- - Joao Bettencourt-Silva
  - Natasha Mulligan
  - et al.
- 2025
- ISMB 2025
Optimal Transport on structured data for improved classification of host health from omics data
- - Nandini Gadhia
  - Michail Smyrnakis
  - et al.
- 2025
- ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision Medicine
- - Ching-Huei Tsou
  - Michal Ozery-Flato
  - et al.
- 2025
- ISMB 2025
Harnessing biomedical foundation models for genomic feature engineering to investigate patient drug response
- - Laura Gardiner
  - Stephen Checkley
  - et al.
- 2025
- ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- - Noa Moriel
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- - Michael Morris Danziger
  - Bharath Dandala
  - et al.
- 2025
- ISMB 2025
Regress, Don't Guess: A Regression-like Loss on Number Tokens for Language Models
- - Jonas Zausinger
  - Lars Pennig
  - et al.
- 2025
- ICML 2025
Avoiding Leakage Poisoning: Concept Interventions Under Distribution Shifts
- - Mateo Espinosa Zarlenga
  - Gabriele Dominici
  - et al.
- 2025
- ICML 2025
Foundation Molecular Grammar: Multi-Modal Foundation Models Induce Interpretable Molecular Graph Languages
- - Michael Sun
  - Weize Yuan
  - et al.
- 2025
- ICML 2025
SPRI: Aligning Large Language Models with Context-Situated Principles
- - Hongli Zhan
  - Muneeza Azmat
  - et al.
- 2025
- ICML 2025