PaccMannRL: Designing anticancer drugs from transcriptomic data via reinforcement learningJannis BornMatteo Manicaet al.2019NeurIPS 2019
Network-based Biased Tree Ensembles (NetBiTE) for Drug Sensitivity Prediction and Drug Sensitivity Biomarker Identification in CancerAli OskooeiMatteo Manicaet al.2019Scientific Reports
Toward Explainable Anticancer Compound Sensitivity Prediction via Multimodal Attention-Based Convolutional EncodersMatteo ManicaAli Oskooeiet al.2019Molecular Pharmaceutics
FPGA Accelerated Analysis of Boolean Gene Regulatory NetworksMatteo ManicaRaphael Poliget al.2019IEEE/ACM TCBB
Context-specific interaction networks from vector representation of wordsMatteo ManicaRoland Mathiset al.2019Nature Machine Intelligence
PIMKL: Pathway-Induced Multiple Kernel LearningMatteo ManicaJoris Cadowet al.2019npj Systems Biology and Applications
NeuNetS: An Automated Synthesis Engine for Neural Network DesignAtin SoodBenjamin Elderet al.2019arXiv
PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networksAli Kazemi OskooeiJannis Bornet al.2018NeurIPS 2018